Mapping disulfide bonds from sub-micrograms of purified proteins or micrograms of complex protein mixtures

(整期优先)网络出版时间:2018-02-12
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Disulfidebondsarevitalforproteinfunctions,butlocatingthelinkagesiteshasbeenachallengeinproteinchemistry,especiallywhenthequantityofasampleissmallorthecomplexityishigh.In2015,ourlaboratorydevelopedasensitiveandefficientmethodformappingproteindisulfidebondsfromsimpleorcomplexsamples(LuetaLinNatMethods12:329,2015).Thismethodisbasedonliquidchromatography-massspectrometry(LC-MS)andapowerfuldataanalysissoftwaretoolnamedpLink.Tofacilitateapplicationofthismethod,wepresentstep-by-stepdisulfidemappingprotocolsforthreetypesofsamples--purifiedproteinsinsolution,proteinsinSDS-PAGEgels,andcomplexproteinmix-turesinsolution.Theminimumamountofproteinrequiredforthismethodcanbeaslowasseveralhundrednanogramsforpurifiedproteins,ortensofmicrogramsforamixtureofhundredsofproteins.Theentireworkflow--fromsamplepreparationtoLC-MSanddataanalysis--isdescribedingreatdetail.Webelievethatthisprotocolcanbeeasilyimplementedinanylaboratorywithaccesstoafast-scanning,high-resolution,andaccurate-massLC-MSsystem.